Public Lectures: Dr. Erdélyi Mikós
- 2016. 09. 26. 12:00: Localization optical microscopy
- 2016. 09. 26. 13:00: Elements of optical imaging
Location: SZTE TTIK Béke épület, Biofizika tanterem (6720 Szeged, Rerrich Béla tér 1. 3. emelet 310.).
[HU] Habilitation lecture
SMLMS 2016 – Lausanne
We participated in the SMLM software challenge with our software. Also we developed two new 3D modalities (Astigmatic and Bi-Plane) for rainSTORM in a short time to compete in those categories as well. These are not released into the wild yet, but be patient.
Posters:
- P016 – Localization analysis with rainSTORM – Tamás Gajdos, József Németh, József Sinkó, Dániel Varga, Eric J. Rees, Gábor Szabó, Miklós Erdélyi
- P039 – From measurement planning to the final image: software solutions for SMLM image processing – József Sinkó, Tamás Gajdos, Tibor Novák, József Németh, Eric J. Rees, Gábor Szabó, Miklós Erdélyi
The results can be found here, and our conclusion:
ELMI2016 – Come and visit us!
We are attending the ELMI2016 Meeting in Debrecen with two posters about the tools we use daily in localization microscopy:
- P007 – Localization analysis with rainSTORM – Tamás Gajdos, József Németh, József Sinkó, Dániel Varga, Eric J. Rees, Gábor Szabó, Miklós Erdélyi
- P041 – Artifact analysis in localization based microscopy – Dániel Varga, József Sinkó, Tamás Gajdos, Gábor Szabó, Miklós Erdélyi
If you have any question or you seek cooperation, don’t hesitate to contact us.
[HU] Research Seminar: Multimodal optical nanoscopy
Location: Ketskeméty room, Bolyai Building 2nd floor
Date: 2016-APR-26. (Tue) 14:00
[HU] OpenUniversity – Imaging on a molecular level
On behalf of the International Year of Light program University of Szeged dedicated OpenUniversity Semester XVI to light . The presentation under the title Imaging on a molecular level can be watched here in Hungarian:
On the Cover Page – Biophysical Journal
A figure was selected for the cover page from the article Manetsberger, J., Manton, J. D., Erdelyi, M. J., Lin, H., Rees, D., Christie, G., & Rees, E. J. (2015). Ellipsoid Localization Microscopy Infers the Size and Order of Protein Layers in Bacillus Spore Coats. Biophysical Journal, 109(10), 2058-2066.
DOI: http://dx.doi.org/10.1016/j.bpj.2015.09.023
rainSTORM v3.0
Two years after rainSTORM v2.37 was released it was time for some refreshing. The rainSTORM v3.0 is here! It was tested under Matlab R2014a but it might run on older versions. (The user guide is still ‘in progress’ but the old one can help your journey.)
To start the application you have to extract the dowloaded file, change the working directory to rainSTORM and run this command: startup; rainSTORM;
Here are the highlights:
PhD graduation ceremony
Our college, József Sinkó has successfully finished the Physics PhD program at the University of Szeged. His dissertation was written under the title „Studying and correcting the optical aberrations and reconstruction errors in localization based super-resolution microscopy” and was defended with a result of 100% on May 5th at the public defence.
The doctoral conferment ceremony will take place on the 26th of June. The dissertation and the thesis synopsis can be accessed from SZTE Repository of Dissertations.
Origin and compensation of imaging artefacts in localization-based super-resolution microscopy
Interpretation of high resolution images provided by localization-based microscopy techniques is a challenge due to imaging artefacts that can be categorized by their origin. They can be introduced by the optical system, by the studied sample or by the applied algorithms. Some artefacts can be eliminated via precise calibration procedures, others can be reduced only below a certain value. Images studied both theoretically and experimentally are qualified either by pattern specific metrics or by a more general metric based on fluorescence correlation spectroscopy.
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