IFM Analyser

IFM Analyser is written in Mathworks MATLAB for dealing with the quantification of sarcomeric structures using pre defined templates (single line, double line, gap) in drosophila flight muscles.


  • Mathworks Matlab R2018b or newer
  • Curve Fitting Toolbox – for quantifying double lines

ROIAnalysisTool v1.0 (2018. Aug): internal development branch

IFM Analyser v2.0 (2019. May): Initial stable release

IFM Analyser v2.0 (2020. April): GNU Octave edition (it can only run in non-gui mode.)

IFM Analyser v2.1 (2020. July): planned release

  • Source code (GPLv3): v2.1 zip archive
  • MATLAB App package: v2.1 (only main app)
  • User Guide: ifm-user-guide-v2.1
    • NEW: GNU Octave compatibility for non-gui mode
    • NEW: csv import & import data filter
    • NEW: Ring sample type
      • The fitting code has been refractored to be more reusable.
      • Bug hunting.
    • NEW: crop, export individual figures on merge tab
    • Changed: mergeData struct format in concatenated_xydata.mat
    • NEW: IFMSizeandDesnity.mlapp to estimate diameter and calculate plots. (packaged version)
    • NEW: IFMEval.mlapp to post evaluate an analysis. (packaged version)
    • NEW: small tool for confocal measurements (external_fit_tool.m)

IFM Analyser latest development version avaliable only as source code.

  • Source code: GitLab Repository or ZIP Archive
  • License: GPLv3
  • Contributing: Pull requests are welcome. For major changes, please open an issue first to discuss what you would like to change. Please make sure to provide a demo dataset.