1st Super-Resolution Symposium (HU)

We have initiated an annual meeting for super-resoultion microscope users in Hungary. The first symposium will take place at University of Szeged, on 8th March 2019.

The preliminary program is built around the major super-resolution techniques and their applications. After the talks the participants can visit multiple microscope laboratories in Szeged. Bring your own samples!


mmSTORM: Multimodal localization based super-resolution microscopy

Super-resolution localization microscopy provides a powerful tool to study biochemical mechanisms at single molecule level. Although the lateral position of the fluorescent dye molecules can be determined routinely with high precision, measurement of other modalities such as 3D and multicolor without the degradation of the original super-resolved image is still in the focus. In this paper a dual-objective multimodal single molecule localization microscopy (SMLM) technique has been developed, optimized and tested. The proposed optical arrangement can be implemented onto a conventional inverted microscope without serious system modification. Read more

TestSTORM version 2.1

Matlab code: testSTORM-v2.1
User Guide:
TestSTORM_ver2.1_guide
Release highlights:

  • Replaced Matlab’s iteration to a custom one for increased reliability when calculating scalar or vectorial PSFs.
  • Modification to the focal position determination when calculating scalar or vectorial PSFs. Results only slightly different focal position than the previous algorithm, in normal cases (~22 nm difference with the default settings).
  • Fixed a bug when calculating scalar or vectorial PSFs (not sure whether a new Matlab version caused it or it was originally in the code). The PSFs shapes and peaks were only marginally affected.
  • Made a workaround for a bug causing higher blinking event brightness when simulating with very low “Sample depth” value.
  • Added “Synaptosomes” option to the random “Vesicles” pattern.
  • Parameters files exported with previous TestSTORM versions (2.0.x) and containing “Rods”, “Vesicles” or “Octagons” patterns can not be imported any longer starting this version.
  • Added a tool with which the generated PSF can be depicted.
    Other clean-ups and modification in the code which should not affect the behaviour of the program.

Successful application at National Talent Program

Tamás Gajdos won a grant at the National Talent Program (Nemzeti Tehetség Program). He will cover the MBFT XVII. Congress registration fee, a german language course and an IT upgrade by this grant.

Read more

TestSTORM: Versatile simulator software for multimodal super-resolution localization fluorescence microscopy

Optimization of sample, imaging and data processing parameters is an essential task in localization based super-resolution microscopy, where the final image quality strongly depends on the imaging of single isolated fluorescent molecules. A computational solution that uses a simulator software for the generation of test data stacks was proposed, developed and tested. The implemented advanced physical models such as scalar and vector based point spread functions, polarization sensitive detection, drift, spectral crosstalk, structured background etc., made the simulation results more realistic and helped us interpret the final super-resolved images and distinguish between real structures and imaging artefacts.

Novák et al., Scientific Reports 7, Article number: 951 (2017) doi:10.1038/s41598-017-01122-7

TestSTORM v2.0 released!